3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00389

Details:

PFam ID : PF00389

PFam Domain Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

Number of Sequence in 50% Dataset : 679

Number of Sequence in Full Dataset : 5360

Average sequence length: 304.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00389	C7ZR39_NECH7_1_125	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00389	E6Q8G8_9ZZZZ_3_89	99.9

Sequence based PCA Plot of the family - PF00389 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=3 Length=18
Motif3 Start=74 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay