3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00386

Details:

PFam ID : PF00386

PFam Domain Description : C1q domain

Number of Sequence in 50% Dataset : 234

Number of Sequence in Full Dataset : 655

Average sequence length: 122.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00386	F2Y386_9PHYC_744_833	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00386	A6EME9_9BACT_74_221	100

Sequence based PCA Plot of the family - PF00386 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=140 Length=8
Motif3 Start=43 Length=14
Motif4 Start=112 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay