3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00385

Details:

PFam ID : PF00385

PFam Domain Description : Chromo (CHRromatin Organisation MOdifier) domain

Number of Sequence in 50% Dataset : 261

Number of Sequence in Full Dataset : 1827

Average sequence length: 53.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00385	A8IZB9_CHLRE_147_236	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00385	E3QQI6_COLGM_84_142	99.7

Sequence based PCA Plot of the family - PF00385 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay