3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00384

Details:

PFam ID : PF00384

PFam Domain Description : Molybdopterin oxidoreductase

Number of Sequence in 50% Dataset : 824

Number of Sequence in Full Dataset : 7210

Average sequence length: 321.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00384	Q6X9G5_SULIS_98_154	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00384	Q00A75_9BACT_1_97	99.0

Sequence based PCA Plot of the family - PF00384 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=68 Length=11
Motif2 Start=26 Length=8
Motif3 Start=114 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay