3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00383

Details:

PFam ID : PF00383

PFam Domain Description : Cytidine and deoxycytidylate deaminase zinc-binding region

Number of Sequence in 50% Dataset : 259

Number of Sequence in Full Dataset : 5223

Average sequence length: 105.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00383	D8QVH4_SELML_10_63	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00383	A8N2U9_COPC7_227_265	87

Sequence based PCA Plot of the family - PF00383 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=137 Length=8
Motif2 Start=19 Length=8
Motif3 Start=166 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay