3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00382

Details:

PFam ID : PF00382

PFam Domain Description : Transcription factor TFIIB repeat

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 786

Average sequence length: 70.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00382	A8M9Y4_CALMQ_197_269	41.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00382	E9C3W3_9EUKA_132_215	100

Sequence based PCA Plot of the family - PF00382 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay