3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00379

Details:

PFam ID : PF00379

PFam Domain Description : Insect cuticle protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 1571

Average sequence length: 53.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00379	B5DPX4_DROPS_31_95	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00379	C0H6M7_BOMMO_37_112	99.2

Sequence based PCA Plot of the family - PF00379 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=37 Length=8
Motif3 Start=64 Length=8
Motif4 Start=47 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay