3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00378

Details:

PFam ID : PF00378

PFam Domain Description : Enoyl-CoA hydratase/isomerase family

Number of Sequence in 50% Dataset : 1422

Number of Sequence in Full Dataset : 9631

Average sequence length: 232.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00378	E6R6H1_CRYGW_498_629	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00378	Q4DID3_TRYCR_867_1015	99.9

Sequence based PCA Plot of the family - PF00378 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=17
Motif2 Start=1 Length=8
Motif3 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay