3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00374

Details:

PFam ID : PF00374

PFam Domain Description : Nickel-dependent hydrogenase

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 1587

Average sequence length: 223.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00374	Q0A725_ALHEH_280_343	77.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00374	D3RZ51_FERPA_37_141	99.9

Sequence based PCA Plot of the family - PF00374 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=27
Motif2 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay