3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00372

Details:

PFam ID : PF00372

PFam Domain Description : Hemocyanin, copper containing domain

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 436

Average sequence length: 248.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00372	E0W2W9_PEDHC_165_446	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00372	A2I5Y6_PORPE_149_226	99.7

Sequence based PCA Plot of the family - PF00372 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=105 Length=8
Motif2 Start=114 Length=8
Motif3 Start=262 Length=14
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay