3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00370

Details:

PFam ID : PF00370

PFam Domain Description : Formin Homology 2 Domain

Number of Sequence in 50% Dataset : 566

Number of Sequence in Full Dataset : 3925

Average sequence length: 233.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00370	Q5G2X3_9ENTR_1_109	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00370	B5YNF4_THAPS_1_310	100

Sequence based PCA Plot of the family - PF00370 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=33 Length=8
Motif3 Start=22 Length=8
Motif4 Start=68 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay