3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00368

Details:

PFam ID : PF00368

PFam Domain Description : Hydroxymethylglutaryl-coenzyme A reductase

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 597

Average sequence length: 338.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00368	Q84A58_9ACTO_1_219	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00368	Q2UXS2_VIBPR_1_141	99.8

Sequence based PCA Plot of the family - PF00368 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=32 Length=8
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay