3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00367

Details:

PFam ID : PF00367

PFam Domain Description : phosphotransferase system, EIIB

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 1946

Average sequence length: 34.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00367	A8S5Y4_9FIRM_20_42	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00367	B6A828_9ENTR_138_164	98.2

Sequence based PCA Plot of the family - PF00367 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay