3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00361

Details:

PFam ID : PF00361

PFam Domain Description : NADH-Ubiquinone/plastoquinone (complex I), various chains

Number of Sequence in 50% Dataset : 813

Number of Sequence in Full Dataset : 13400

Average sequence length: 236.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00361	D5GGB8_TUBMM_1_60	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00361	D5FT90_9SAUR_1_77	99.9

Sequence based PCA Plot of the family - PF00361 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=11
Motif2 Start=50 Length=18
Motif3 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay