3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00358

Details:

PFam ID : PF00358

PFam Domain Description : phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 1294

Average sequence length: 130.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00358	Q3DHT1_STRAG_1_49	79.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00358	C0E6F8_9CORY_187_331	100

Sequence based PCA Plot of the family - PF00358 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay