3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00357

Details:

PFam ID : PF00357

PFam Domain Description : Integrin alpha cytoplasmic region

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 49

Average sequence length: 14.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00357	C3Y4C6_BRAFL_1084_1098	71.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00357	B2GUF9_XENTR_1026_1040	100

Sequence based PCA Plot of the family - PF00357 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay