3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00356

Details:

PFam ID : PF00356

PFam Domain Description : Bacterial regulatory proteins, lacI family

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 6365

Average sequence length: 45.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00356	C2KIE0_LEUMC_26_62	5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00356	C7MHY0_BRAFD_1_28	100

Sequence based PCA Plot of the family - PF00356 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=10 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay