3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00352

Details:

PFam ID : PF00352

PFam Domain Description : Transcription factor TFIID (or TATA-binding protein, TBP)

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 507

Average sequence length: 82.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00352	A7AR08_BABBO_176_233	68.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00352	B2B3Y6_PODAN_116_212	100

Sequence based PCA Plot of the family - PF00352 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=45 Length=8
Motif3 Start=3 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay