3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00351

Details:

PFam ID : PF00351

PFam Domain Description : Biopterin-dependent aromatic amino acid hydroxylase

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 419

Average sequence length: 215.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00351	B3VS02_PANTR_1_32	62.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00351	E5SXB5_TRISP_25_114	99.0

Sequence based PCA Plot of the family - PF00351 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=64 Length=8
Motif3 Start=50 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay