3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00350

Details:

PFam ID : PF00350

PFam Domain Description : Dynamin family

Number of Sequence in 50% Dataset : 428

Number of Sequence in Full Dataset : 1953

Average sequence length: 175.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00350	Q0U448_PHANO_79_384	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00350	F0Z938_DICPU_52_243	99.6

Sequence based PCA Plot of the family - PF00350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay