3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00345

Details:

PFam ID : PF00345

PFam Domain Description : Gram-negative pili assembly chaperone, N-terminal domain

Number of Sequence in 50% Dataset : 202

Number of Sequence in Full Dataset : 1020

Average sequence length: 119.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00345	A8F1N3_RICM5_27_112	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00345	B4RAF6_PHEZH_40_190	100

Sequence based PCA Plot of the family - PF00345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=143 Length=8
Motif2 Start=102 Length=8
Motif3 Start=4 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay