3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00343

Details:

PFam ID : PF00343

PFam Domain Description : Carbohydrate phosphorylase

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 1404

Average sequence length: 504.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00343	C2BH19_9FIRM_91_286	12.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00343	A5B9A0_VITVI_205_321	99.9

Sequence based PCA Plot of the family - PF00343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=47 Length=8
Motif2 Start=38 Length=8
Motif3 Start=12 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay