3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00340

Details:

PFam ID : PF00340

PFam Domain Description : Interleukin-1 / 18

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 150

Average sequence length: 108.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00340	B5XEL0_SALSA_67_191	59.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00340	Q98SQ1_ANAPL_78_199	100

Sequence based PCA Plot of the family - PF00340 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay