3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00339

Details:

PFam ID : PF00339

PFam Domain Description : Arrestin (or S-antigen), N-terminal domain

Number of Sequence in 50% Dataset : 329

Number of Sequence in Full Dataset : 853

Average sequence length: 136.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00339	Q0UZE5_PHANO_41_141	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00339	E2AQL8_9HYME_1_106	99.0

Sequence based PCA Plot of the family - PF00339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=93 Length=8
Motif3 Start=11 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay