3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00336

Details:

PFam ID : PF00336

PFam Domain Description : DNA polymerase (viral) C-terminal domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 54

Average sequence length: 105.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00336	E2BSC7_9HYME_3_117	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00336	Q8BCI7_HBV_601_843	100

Sequence based PCA Plot of the family - PF00336 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay