3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00335

Details:

PFam ID : PF00335

PFam Domain Description : Tetraspanin family

Number of Sequence in 50% Dataset : 676

Number of Sequence in Full Dataset : 1653

Average sequence length: 203.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00335	E0W1X5_PEDHC_3_78	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00335	B9RK98_RICCO_3_301	99.1

Sequence based PCA Plot of the family - PF00335 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=10 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay