3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00334

Details:

PFam ID : PF00334

PFam Domain Description : Nucleoside diphosphate kinase

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 1436

Average sequence length: 129.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00334	D2E8E1_9VIRU_2_68	63.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00334	D0NBP2_PHYIT_95_204	100

Sequence based PCA Plot of the family - PF00334 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=89 Length=8
Motif2 Start=1 Length=8
Motif3 Start=102 Length=8
Motif4 Start=116 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay