3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00331

Details:

PFam ID : PF00331

PFam Domain Description : Glycosyl hydrolase family 10

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 1298

Average sequence length: 234.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00331	A6XB96_SORCE_1_140	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00331	C7G8W3_9FIRM_48_241	100

Sequence based PCA Plot of the family - PF00331 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=101 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay