3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00330

Details:

PFam ID : PF00330

PFam Domain Description : Aconitase family (aconitate hydratase)

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 3817

Average sequence length: 314.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00330	A9G0G3_SORC5_203_655	64.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00330	E9C2C6_9EUKA_685_760	99.4

Sequence based PCA Plot of the family - PF00330 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=20 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay