3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00328

Details:

PFam ID : PF00328

PFam Domain Description : Histidine phosphatase superfamily (branch 2)

Number of Sequence in 50% Dataset : 604

Number of Sequence in Full Dataset : 1509

Average sequence length: 313.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00328	A4KRF8_FRATU_35_343	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00328	C3XYI6_BRAFL_35_142	98.8

Sequence based PCA Plot of the family - PF00328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=49 Length=8
Motif2 Start=30 Length=18
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay