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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00325
Details:

PFam ID : PF00325

PFam Domain Description : Bacterial regulatory proteins, crp family

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 217

Average sequence length: 30.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00325C9YF02_9BURK_141_1675.2
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00325D0TCR7_9BACE_165_18790.7
Sequence based PCA Plot of the family - PF00325 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay