3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00325 Details: PFam ID : PF00325 PFam Domain Description : Bacterial regulatory proteins, crp family Number of Sequence in 50% Dataset : 20 Number of Sequence in Full Dataset : 217 Average sequence length: 30.7 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00325C9YF02_9BURK_141_1675.2 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00325D0TCR7_9BACE_165_18790.7 Sequence based PCA Plot of the family - PF00325 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=19 Length=8Motif2 Start=10 Length=8Motif3 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF00325
PFam Domain Description : Bacterial regulatory proteins, crp family
Number of Sequence in 50% Dataset : 20
Number of Sequence in Full Dataset : 217
Average sequence length: 30.7
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER