3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00324

Details:

PFam ID : PF00324

PFam Domain Description : Amino acid permease

Number of Sequence in 50% Dataset : 563

Number of Sequence in Full Dataset : 3511

Average sequence length: 398.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00324	D5REA2_FUSNN_4_203	70.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00324	A2DYY6_TRIVA_2_183	99.6

Sequence based PCA Plot of the family - PF00324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay