3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00323

Details:

PFam ID : PF00323

PFam Domain Description : Mammalian defensin

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 46

Average sequence length: 28.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00323	E9Q8S4_MOUSE_66_93	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00323	DEF2_CAVPO_65_93	100

Sequence based PCA Plot of the family - PF00323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay