3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00320

Details:

PFam ID : PF00320

PFam Domain Description : GATA zinc finger

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 698

Average sequence length: 34.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00320	A7EQH5_SCLS1_1_51	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00320	Q9PUN0_XENLA_367_404	99.7

Sequence based PCA Plot of the family - PF00320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay