3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00316

Details:

PFam ID : PF00316

PFam Domain Description : Fructose-1-6-bisphosphatase

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 749

Average sequence length: 298.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00316	Q9QXB2_MOUSE_1_28	59.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00316	C4K6A1_HAMD5_1_91	100

Sequence based PCA Plot of the family - PF00316 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=164 Length=8
Motif3 Start=100 Length=8
Motif4 Start=192 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay