3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00314

Details:

PFam ID : PF00314

PFam Domain Description : Thaumatin family

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 606

Average sequence length: 169.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00314	B8HN72_CYAP4_96_426	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00314	A0LJV3_SYNFM_256_497	98.0

Sequence based PCA Plot of the family - PF00314 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=214 Length=11
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay