3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00313

Details:

PFam ID : PF00313

PFam Domain Description : cold shock DNA binding domain

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 2881

Average sequence length: 64.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00313	C2W7Z9_BACCE_5_81	76.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00313	F2UDX0_9EUKA_559_622	99.8

Sequence based PCA Plot of the family - PF00313 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=61 Length=11
Motif2 Start=48 Length=8
Motif3 Start=8 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay