3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00310

Details:

PFam ID : PF00310

PFam Domain Description : Glutamine amidotransferases class-II

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 2043

Average sequence length: 210.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00310	Q4UFR7_THEAN_90_274	68.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00310	A2G3K2_TRIVA_2_67	75

Sequence based PCA Plot of the family - PF00310 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=134 Length=8
Motif2 Start=225 Length=8
Motif3 Start=23 Length=8
Motif4 Start=342 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay