3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00308

Details:

PFam ID : PF00308

PFam Domain Description : Bacterial dnaA protein

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 1194

Average sequence length: 193.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00308	A4NXM4_HAEIF_1_113	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00308	C2KZR0_9FIRM_1_107	100

Sequence based PCA Plot of the family - PF00308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=40 Length=8
Motif3 Start=23 Length=11
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay