3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00307

Details:

PFam ID : PF00307

PFam Domain Description : Calponin homology (CH) domain

Number of Sequence in 50% Dataset : 334

Number of Sequence in Full Dataset : 2343

Average sequence length: 105.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00307	F2UAX4_9EUKA_7_104	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00307	E9QFG1_DANRE_401_644	96.0

Sequence based PCA Plot of the family - PF00307 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay