3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00306

Details:

PFam ID : PF00306

PFam Domain Description : ATP synthase alpha/beta chain, C terminal domain

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 3701

Average sequence length: 108.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00306	A0E2E9_PARTE_474_609	62.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00306	Q08GB1_POPAL_150_211	58

Sequence based PCA Plot of the family - PF00306 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=14
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay