3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00305

Details:

PFam ID : PF00305

PFam Domain Description : Lipoxygenase

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 500

Average sequence length: 391.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00305	B7K2Q5_CYAP8_280_500	73.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00305	A2ZLM2_ORYSI_80_266	96.1

Sequence based PCA Plot of the family - PF00305 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=279 Length=11
Motif2 Start=375 Length=8
Motif3 Start=3 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay