3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00304

Details:

PFam ID : PF00304

PFam Domain Description : Gamma-thionin family

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 233

Average sequence length: 46.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00304	C5XH32_SORBI_27_77	17.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00304	C5YIJ6_SORBI_36_82	100

Sequence based PCA Plot of the family - PF00304 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=20
Motif2 Start=1 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay