3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00303

Details:

PFam ID : PF00303

PFam Domain Description : Thymidylate synthase

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 1080

Average sequence length: 257.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00303	D1XVA0_9BACT_1_96	82.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00303	TYSY_BORBR_1_323	100

Sequence based PCA Plot of the family - PF00303 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=11
Motif2 Start=1 Length=11
Motif3 Start=310 Length=14
Motif4 Start=253 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay