3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00302

Details:

PFam ID : PF00302

PFam Domain Description : Chloramphenicol acetyltransferase

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 232

Average sequence length: 181.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00302	C6BWS2_DESAD_10_220	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00302	B1BYN1_9FIRM_1_107	100

Sequence based PCA Plot of the family - PF00302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay