3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00296

Details:

PFam ID : PF00296

PFam Domain Description : Luciferase-like monooxygenase

Number of Sequence in 50% Dataset : 825

Number of Sequence in Full Dataset : 5679

Average sequence length: 297.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00296	D6EMG3_STRLI_6_69	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00296	D6B6W9_9ACTO_1_180	99.8

Sequence based PCA Plot of the family - PF00296 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=82 Length=8
Motif3 Start=40 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay