3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00295

Details:

PFam ID : PF00295

PFam Domain Description : Glycosyl hydrolases family 28

Number of Sequence in 50% Dataset : 323

Number of Sequence in Full Dataset : 1545

Average sequence length: 276.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00295	D7IK78_9BACE_129_289	77.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00295	B8ADH8_ORYSI_240_271	99.8

Sequence based PCA Plot of the family - PF00295 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=59 Length=18
Motif3 Start=6 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay