3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00294

Details:

PFam ID : PF00294

PFam Domain Description : pfkB family carbohydrate kinase

Number of Sequence in 50% Dataset : 1966

Number of Sequence in Full Dataset : 7813

Average sequence length: 277.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00294	A4RK58_MAGO7_487_702	83.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00294	C2LU11_STRSL_4_79	99.8

Sequence based PCA Plot of the family - PF00294 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=114 Length=14
Motif2 Start=105 Length=8
Motif3 Start=36 Length=8
Motif4 Start=70 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay