3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00293

Details:

PFam ID : PF00293

PFam Domain Description : NUDIX domain

Number of Sequence in 50% Dataset : 2075

Number of Sequence in Full Dataset : 14814

Average sequence length: 131.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00293	A9TG83_PHYPA_85_246	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00293	C4SY53_YERIN_1_87	99.5

Sequence based PCA Plot of the family - PF00293 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay