3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00290

Details:

PFam ID : PF00290

PFam Domain Description : Tryptophan synthase alpha chain

Number of Sequence in 50% Dataset : 122

Number of Sequence in Full Dataset : 1306

Average sequence length: 246.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00290	B0P8T8_9FIRM_1_155	77.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00290	A6G758_9DELT_23_286	100

Sequence based PCA Plot of the family - PF00290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=8
Motif2 Start=32 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay